computing score 'score_HumanCD45p_scseqCMs6_ActB_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Fcrl5', 'Ccr7', 'Cd40', 'Batf']
finished: added
'score_HumanCD45p_scseqCMs6_ActB_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Activation_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd69', 'Ccl5', 'Tnfrsf9']
finished: added
'score_HumanCD45p_scseqCMs6_Activation_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Basophil_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr3', 'Cd69', 'Tlr4']
finished: added
'score_HumanCD45p_scseqCMs6_Basophil_scanpyUP', score of gene set (adata.obs).
300 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Bcells_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd19', 'Ms4a1', 'Cd79a']
finished: added
'score_HumanCD45p_scseqCMs6_Bcells_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_CCG1S_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_CCG1S_scanpyUP', score of gene set (adata.obs).
645 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_CCG2M_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_CCG2M_scanpyUP', score of gene set (adata.obs).
550 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Cafs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Thy1', 'Dcn', 'Col1a1', 'Col1a2', 'Col6a1', 'Col6a2', 'Col6a3', 'Cxcl14', 'Lum', 'Col3a1', 'Dpt', 'Islr', 'Cd248', 'Mxra8']
finished: added
'score_HumanCD45p_scseqCMs6_Cafs_scanpyUP', score of gene set (adata.obs).
49 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Cellcycle_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_Cellcycle_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Checkpoint_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tigit', 'Cd274', 'Lag3', 'Pdcd1', 'Havcr2']
finished: added
'score_HumanCD45p_scseqCMs6_Checkpoint_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Cyto_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ifng', 'Il4', 'Il6', 'Il10', 'Il13', 'Il16', 'Il21', 'Il22', 'Il1b', 'Gzmb', 'Prf1', 'Cxcl9', 'Cxcl10', 'Cxcl11', 'Cxcl12', 'Ccl2', 'Ccl3', 'Ccl5', 'Ccl7', 'Ccl11', 'Ccl17', 'NaN', 'Ccl22', 'Ccl24', 'Ccl8']
finished: added
'score_HumanCD45p_scseqCMs6_Cyto_scanpyUP', score of gene set (adata.obs).
350 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Cytotox_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Nkg7', 'Gzmb', 'Gzmk', 'Gzma', 'Crtam', 'Cst7']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_DCR_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tlr8']
finished: added
'score_HumanCD45p_scseqCMs6_DCR_scanpyUP', score of gene set (adata.obs).
349 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_DCrec_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tlr8']
finished: added
'score_HumanCD45p_scseqCMs6_DCrec_scanpyUP', score of gene set (adata.obs).
349 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_DCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr2', 'Ccr7', 'Rnase6', 'Clec9a', 'Btla', 'Tlr7', 'Klrd1', 'Ccr7']
finished: added
'score_HumanCD45p_scseqCMs6_DCs_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Eff_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr3', 'Tbx21', 'Eomes', 'Prf1', 'Ccr10', 'Aqp3', 'Dusp2']
finished: added
'score_HumanCD45p_scseqCMs6_Eff_scanpyUP', score of gene set (adata.obs).
49 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Endo_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd34', 'Cdh5', 'Eng', 'Flt4', 'Itgb3', 'Kdr', 'Mcam', 'Pecam1', 'Procr', 'Sele', 'Tek', 'Vcam1']
finished: added
'score_HumanCD45p_scseqCMs6_Endo_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Endot_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd34', 'Cdh5', 'Flt4', 'Itgb3', 'Kdr', 'Mcam', 'Pecam1', 'Procr', 'Sele', 'Tek', 'Vcam1']
finished: added
'score_HumanCD45p_scseqCMs6_Endot_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Endothelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pecam1', 'Cdh5', 'Cldn5', 'Plvap', 'Mmrn1', 'Kdr', 'Tie1', 'Erg', 'Fabp4']
finished: added
'score_HumanCD45p_scseqCMs6_Endothelial_scanpyUP', score of gene set (adata.obs).
198 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Eosinophil_scanpyUP'
WARNING: genes are not in var_names and ignored: ['C3ar1', 'C5ar1', 'Ccr1l1', 'Ccr3', 'Cd244a', 'Cd52', 'Cd53', 'Cxcr3', 'Fcer2a', 'Il9r', 'Itga4', 'Lair1', 'Ptgdr2', 'Gm5849', 'Siglece']
finished: added
'score_HumanCD45p_scseqCMs6_Eosinophil_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Epith_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_Epith_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_ExhB_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Nr4a3', 'Egr3', 'Nr4a1', 'Egr2']
finished: added
'score_HumanCD45p_scseqCMs6_ExhB_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Granulo_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Csf3r', 'Itgax', 'Gm5849', 'Hcar2', 'Clec4d', 'S100a8', 'Retn']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_HLA_scanpyUP'
WARNING: genes are not in var_names and ignored: ['H2-Eb2']
finished: added
'score_HumanCD45p_scseqCMs6_HLA_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_HLAP_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_HLAP_scanpyUP', score of gene set (adata.obs).
498 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_HLAS_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_HLAS_scanpyUP', score of gene set (adata.obs).
349 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Ifi_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Mx2', 'Ifitm7']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Ifng_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcl9', 'Cxcl10', 'Ido1', 'Ifng']
finished: added
'score_HumanCD45p_scseqCMs6_Ifng_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Macrophage_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd86', 'Ccr1l1', 'Ccr5', 'Adgre1', 'C1qa', 'C1qb', 'Gm15922', 'Csf1r', 'Msr1', 'Gpr34']
finished: added
'score_HumanCD45p_scseqCMs6_Macrophage_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Mast_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_Mast_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Megakaryocytes_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr4', 'Gp1ba', 'Itga2b', 'Itgb3', 'Pecam1', 'Selp']
finished: added
'score_HumanCD45p_scseqCMs6_Megakaryocytes_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_MelMelan_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gm21983', 'Tyr', 'Slc45a2', 'Cdh19', 'Capn3', 'Gpm6b', 'S100b', 'Pax3', 'Mlana']
finished: added
'score_HumanCD45p_scseqCMs6_MelMelan_scanpyUP', score of gene set (adata.obs).
300 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_MelMesen_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Rgs5', 'Bgn', 'Tnc', 'Igfbp6', 'Gfra2']
finished: added
'score_HumanCD45p_scseqCMs6_MelMesen_scanpyUP', score of gene set (adata.obs).
499 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_MemB_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tnfrsf13b', 'Igha', 'Cd27', 'Cxcr3']
finished: added
'score_HumanCD45p_scseqCMs6_MemB_scanpyUP', score of gene set (adata.obs).
250 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Memory_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Il7r', 'Cxcr4', 'Gpr183', 'Cd84']
finished: added
'score_HumanCD45p_scseqCMs6_Memory_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Mo14_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_Mo14_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Mo16_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Fcgr4']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_MoMa_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Fcgr2b', 'Fcgr4', 'Ccr1l1']
finished: added
'score_HumanCD45p_scseqCMs6_MoMa_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Monocytes_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Fcgr2b', 'Fcgr4', 'Gpr34', 'Ms4a7', 'Fcgr1', 'Msr1']
finished: added
'score_HumanCD45p_scseqCMs6_Monocytes_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Myelo_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tyrobp', 'Ccr2', 'Cd34', 'Fcgr1']
finished: added
'score_HumanCD45p_scseqCMs6_Myelo_scanpyUP', score of gene set (adata.obs).
199 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_MyeloSubtype_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Siglech', 'Gm5849', 'S100a8', 'Cd80']
finished: added
'score_HumanCD45p_scseqCMs6_MyeloSubtype_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_NKT_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tyrobp', 'Fcer1g', 'Clic3']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_NKcells_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sh2d1b2', 'Il2rb', 'Trdc', 'Xcl1', 'Igfbp7', 'Ncr1', 'Il18rap']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_NKcyt_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd160', 'Spon2', 'Fcgr4', 'Cd247', 'Ccl4']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_NKnai_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Xcl1', 'Sell', 'Ccr7', 'Fut7']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Naive_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sell', 'Ccr7', 'Lef1']
finished: added
'score_HumanCD45p_scseqCMs6_Naive_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_NaiveB_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ighm', 'Tcl1', 'Sell', 'Fcer2a', 'Satb1', 'Btla']
finished: added
'score_HumanCD45p_scseqCMs6_NaiveB_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Neutrophil_scanpyUP'
WARNING: genes are not in var_names and ignored: ['C5ar1', 'Siglech', 'Csf3r', 'Cxcr1', 'Cxcr2', 'Fcgr1', 'Itgax']
finished: added
'score_HumanCD45p_scseqCMs6_Neutrophil_scanpyUP', score of gene set (adata.obs).
249 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_NonEff_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd27', 'Cd28']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_OMyelo_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd34']
finished: added
'score_HumanCD45p_scseqCMs6_OMyelo_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Others_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tyrobp']
finished: added
'score_HumanCD45p_scseqCMs6_Others_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Plasma_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd79a', 'Igf1', 'Itga8']
finished: added
'score_HumanCD45p_scseqCMs6_Plasma_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Pyro_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_Pyro_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Stemmess_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cdh2', 'Loxl2']
finished: added
'score_HumanCD45p_scseqCMs6_Stemmess_scanpyUP', score of gene set (adata.obs).
647 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_StemmessS_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_StemmessS_scanpyUP', score of gene set (adata.obs).
199 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Stromal_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Icam2', 'Itga4', 'Madcam1', 'Mmp1a', 'Mmp2', 'Mmp9', 'Pdgfra', 'Pecam1', 'Thy1', 'Timp1', 'Tlr4', 'Vcam1']
finished: added
'score_HumanCD45p_scseqCMs6_Stromal_scanpyUP', score of gene set (adata.obs).
399 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_T4CM_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gpr183', 'Aqp3', 'Fut7', 'Cd84', 'Gpr171']
finished: added
'score_HumanCD45p_scseqCMs6_T4CM_scanpyUP', score of gene set (adata.obs).
300 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TAM_scanpyUP'
WARNING: genes are not in var_names and ignored: ['C1qa', 'C1qb', 'Gpr34', 'C3', 'Cxcl12', 'Siglec1', 'Cd209c', 'F13a1', 'Msr1']
finished: added
'score_HumanCD45p_scseqCMs6_TAM_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TAMCx_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcl10', 'Cxcl11', 'Cxcl9']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_TEM_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tigit', 'Gzmk', 'Cd84', 'Cd27', 'Dusp2', 'Gpr171']
finished: added
'score_HumanCD45p_scseqCMs6_TEM_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TMO_scanpyUP'
WARNING: genes are not in var_names and ignored: ['S100a8', 'Gm5849', 'Vcan', 'Cd300e', 'Il1b']
finished: added
'score_HumanCD45p_scseqCMs6_TMO_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TMid_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Marco', 'Clec5a']
finished: added
'score_HumanCD45p_scseqCMs6_TMid_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TNK_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd2', 'Cd7', 'Lat', 'Cd6', 'Cd96', 'Lat', 'Cd247']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_TStem_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr5', 'Cxcr3', 'Pdcd1', 'Slamf6', 'Il18r1', 'Il7r']
finished: added
'score_HumanCD45p_scseqCMs6_TStem_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TStemhi_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr5', 'Cxcr3', 'Pdcd1', 'Slamf6', 'Il18r1', 'Il7r']
finished: added
'score_HumanCD45p_scseqCMs6_TStemhi_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TSteml_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd27', 'Cd28', 'Icos', 'Il2ra']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_TStemlo_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd27', 'Cd28', 'Icos', 'Il2ra']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_TTh1_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr1l1', 'Ccr5', 'Cd4', 'Csf2', 'Cxcr3', 'Havcr2', 'Ifna9', 'Klrd1', 'Tnfsf11']
finished: added
'score_HumanCD45p_scseqCMs6_TTh1_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TTh17_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr4', 'Ccr6', 'Cd4', 'Il17a', 'Il1r1', 'Il21', 'Il22', 'Klrb1f']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_TTh2_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr3', 'Ccr4', 'Ccr7', 'Ccr8', 'Cd4', 'Csf2', 'Gata3', 'Timd2', 'Icos', 'Icos', 'Il10', 'Il13', 'Il1r1', 'Il4', 'Il5', 'Il6', 'Ptgdr2']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Tcd4_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd4', 'Gpr183']
finished: added
'score_HumanCD45p_scseqCMs6_Tcd4_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Tcd8_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd8a', 'Cd8b1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Tcells_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd3e', 'Cd3d', 'Cd3g', 'Trat1']
finished: added
'score_HumanCD45p_scseqCMs6_Tcells_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Tcgd_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcrg-C1', 'Trdc']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Tcytox_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcrg-C1', 'Klrd1', 'Fcgr4', 'Gzmb', 'Prf1', 'Spon2', 'Clic3']
finished: added
'score_HumanCD45p_scseqCMs6_Tcytox_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Teff_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd8a', 'Gzma', 'Gzmb', 'Ifng', 'Eomes', 'Cxcl9', 'Cxcl10', 'Tbx21', 'Cd274', 'Pdcd1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_Tfh_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Bcl6', 'Cd40lg', 'Cd84', 'Cxcr5', 'Icos', 'Pdcd1', 'Cd4']
finished: added
'score_HumanCD45p_scseqCMs6_Tfh_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_TilCM_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr6', 'Slc4a10', 'Il7r', 'Il18rap', 'Zbtb16', 'Cebpd', 'Slc4a10', 'Ccr2', 'Adam12', 'Klrb1f', 'Gzmk']
finished: added
'score_HumanCD45p_scseqCMs6_TilCM_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Tpexh_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Icos', 'Tnfsf14', 'Sell', 'Il7r', 'Lef1', 'Satb1', 'Bcl6', 'Cxcr5', 'Ccr7', 'Xcl1', 'Cxcl10']
finished: added
'score_HumanCD45p_scseqCMs6_Tpexh_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Treg_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Foxp3', 'Il2ra', 'Lrrc32']
finished: added
'score_HumanCD45p_scseqCMs6_Treg_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Ttexh_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pdcd1', 'Havcr2', 'Lag3', 'Cd244a', 'Entpd1', 'Cd101', 'Tnfrsf9', 'Il2rb', 'Ifng', 'Il10', 'Gzma', 'Gzmb', 'Prf1', 'Prdm1', 'Runx3', 'Tbx21', 'Cxcr1', 'Ccl5', 'Ccl4', 'Ccl3', 'Csf1']
finished: added
'score_HumanCD45p_scseqCMs6_Ttexh_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_Ubi_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gm17087']
finished: added
'score_HumanCD45p_scseqCMs6_Ubi_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_UnivExh_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Nr4a3', 'Egr3', 'Nr4a1', 'Egr2']
finished: added
'score_HumanCD45p_scseqCMs6_UnivExh_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_UnivMem_scanpyUP'
finished: added
'score_HumanCD45p_scseqCMs6_UnivMem_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_UnivNaive_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sell']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_HumanCD45p_scseqCMs6_aDCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccr7', 'Ccl22', 'Ccl17', 'Fscn1', 'NaN', 'Nudt17']
finished: added
'score_HumanCD45p_scseqCMs6_aDCs_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_allSteml_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pdcd1', 'Cd28', 'Cxcr5', 'Il2ra', 'Havcr2', 'Slamf6', 'Il2rb', 'Gzmb', 'S1pr1', 'Cxcr3', 'Ifng', 'Il18r1', 'Cd244a', 'Il10', 'Entpd1']
finished: added
'score_HumanCD45p_scseqCMs6_allSteml_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_cDC1_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec9a', 'Batf3', 'Xcr1', 'Wdfy4', 'Clnk', 'Asb2']
finished: added
'score_HumanCD45p_scseqCMs6_cDC1_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_cDC2_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec10a', 'Fcer1a', 'Pkib']
finished: added
'score_HumanCD45p_scseqCMs6_cDC2_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_cDCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec9a', 'Btla', 'Clec10a', 'Pkib', 'Xcr1']
finished: added
'score_HumanCD45p_scseqCMs6_cDCs_scanpyUP', score of gene set (adata.obs).
300 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_epDCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Klrd1']
finished: added
'score_HumanCD45p_scseqCMs6_epDCs_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_general_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ptprc', 'Gm17087', 'Bcl6']
finished: added
'score_HumanCD45p_scseqCMs6_general_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_moDC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Lypd2']
finished: added
'score_HumanCD45p_scseqCMs6_moDC_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_pDCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tlr7', 'Lilra6', 'Runx2', 'Irf4', 'Clic3']
finished: added
'score_HumanCD45p_scseqCMs6_pDCs_scanpyUP', score of gene set (adata.obs).
400 total control genes are used. (0:00:00)
computing score 'score_HumanCD45p_scseqCMs6_uDCs_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Klrd1', 'C7']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Bcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd19', 'Ms4a1', 'Tnfrsf13c', 'Cd22']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Fibroblast_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Col6a1', 'Mxra8', 'Acta2', 'Tagln', 'Bgn']
finished: added
'score_Fibroblast_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_Endothelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cdh5', 'Cldn5', 'Kdr', 'Tie1', 'Dnase1l3', 'Akap12', 'Ptprb', 'Stab2']
finished: added
'score_Endothelial_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_Epithelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Klk1b27']
finished: added
'score_Epithelial_scanpyUP', score of gene set (adata.obs).
349 total control genes are used. (0:00:00)
computing score 'score_Granulocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Elane', 'Mpo', 'Prtn3', 'Ctsg', 'Ms4a3', 'Hdc']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_MelMelanoma_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gm21983', 'Tyr', 'Slc45a2', 'Cdh19', 'Capn3', 'Gpm6b', 'S100b', 'Pax3', 'Mlana']
finished: added
'score_MelMelanoma_scanpyUP', score of gene set (adata.obs).
300 total control genes are used. (0:00:00)
computing score 'score_MemBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tnfrsf13b', 'Igha']
finished: added
'score_MemBcell_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Myeloid_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Csf3r', 'Gm5849', 'Lilra6', 'Msr1', 'Marco', 'Mpo']
finished: added
'score_Myeloid_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_NKcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sh2d1b2', 'Ptgdr', 'Il2rb', 'Trdc', 'Xcl1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_NaiBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ighm', 'Cd72', 'Tcl1', 'Fcer2a', 'Btla', 'Fcrl1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Neutrophil_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Elane', 'Mpo', 'Prtn3', 'Ctsg']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Plasma_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd79a', 'Itga8', 'Tnfrsf17', 'Pkhd1l1', 'Jsrp1']
finished: added
'score_Plasma_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_CD4Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd4', 'Trat1']
finished: added
'score_CD4Tcell_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_CD8Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd8a', 'Cd8b1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd3e', 'Cd3d', 'Cd3g', 'Trat1', 'Cd2']
finished: added
'score_Tcell_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_CD8Tcell_IL7Rmax_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr6', 'Slc4a10', 'Il7r', 'Il18rap', 'Zbtb16', 'Cebpd', 'Slc4a10', 'Ccr2', 'Adam12', 'Klrb1f', 'Gzmk']
finished: added
'score_CD8Tcell_IL7Rmax_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_CD4Tcell_IL7Rmax_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr6', 'Slc4a10', 'Il7r', 'Il18rap', 'Zbtb16', 'Cebpd', 'Slc4a10', 'Ccr2', 'Adam12', 'Klrb1f', 'Gzmk']
finished: added
'score_CD4Tcell_IL7Rmax_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_RegTcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Foxp3', 'Il2ra', 'Lrrc32']
finished: added
'score_RegTcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_cDC1_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec9a', 'Xcr1', 'Zfp366', 'Batf3']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_cDC2_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Enho', 'Clec10a', 'Fcer1a']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_cDC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec9a', 'Xcr1', 'Zfp366', 'Batf3', 'Ccl22', 'Ccl17', 'NaN', 'Nudt17', 'Enho', 'Clec10a', 'Axl', 'Gm15922']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_NClassMonocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Fcgr4']
finished: added
'score_NClassMonocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_pDC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Clec4b2', 'Ptcra', 'Lamp5', 'Dntt', 'Ccr9', 'Cox6a2']
finished: added
'score_pDC_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_Hematopoietic_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ptprc', 'Coro1a', 'Cd53', 'Laptm5', 'Cxcr4']
finished: added
'score_Hematopoietic_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_Blymphocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd19', 'Ms4a1', 'Cd79a', 'Itga8', 'Iglc1', 'Pou2af1']
finished: added
'score_Blymphocyte_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_CD56dimNK_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd160', 'Spon2', 'Fcgr4', 'Ccl4', 'S1pr5']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_CD56brightNK_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Xcl1', 'Sell', 'Ccr7', 'Fut7']
finished: added
'score_CD56brightNK_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_NaiCD4Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sell', 'Ccr7', 'Lef1', 'Nell2', 'Camk4', 'Mal']
finished: added
'score_NaiCD4Tcell_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_NaiCD8Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sell', 'Ccr7', 'Lef1', 'Nell2', 'Camk4', 'Mal']
finished: added
'score_NaiCD8Tcell_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_ProlifCD8Tcell_scanpyUP'
finished: added
'score_ProlifCD8Tcell_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ProlifCD4Tcell_scanpyUP'
finished: added
'score_ProlifCD4Tcell_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ProlifBcell_scanpyUP'
finished: added
'score_ProlifBcell_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_CMCD4Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pkia', 'Ap3m2', 'Aqp3']
finished: added
'score_CMCD4Tcell_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_EMCD8Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tigit', 'Gzmk', 'Cd84', 'Cd27', 'Dusp2', 'Gpr171']
finished: added
'score_EMCD8Tcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_EMCD4Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tigit', 'Gzmk', 'Cd84', 'Cd27', 'Dusp2', 'Gpr171']
finished: added
'score_EMCD4Tcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ClassMonocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Vcan']
finished: added
'score_ClassMonocyte_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Macrophage_MARCO_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Marco']
finished: added
'score_Macrophage_MARCO_scanpyUP', score of gene set (adata.obs).
148 total control genes are used. (0:00:00)
computing score 'score_NKTcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd2', 'Cd7', 'Lat', 'Cd6', 'Cd96', 'Lat', 'Cd247']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_gdTcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcrg-C1', 'Trdc', 'Tcrg-C1', 'Klrg1', 'Tcrg-C1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_CytotoxCD4Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcrg-C1', 'Klrd1', 'Fcgr4', 'Gzmb', 'Prf1', 'Spon2', 'Clic3', 'Samd3']
finished: added
'score_CytotoxCD4Tcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_CytotoxCD8Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcrg-C1', 'Klrd1', 'Fcgr4', 'Gzmb', 'Prf1', 'Spon2', 'Clic3', 'Samd3']
finished: added
'score_CytotoxCD8Tcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ExhCD8Tcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pdcd1', 'Havcr2', 'Lag3', 'Cd244a', 'Entpd1', 'Cd101', 'Tnfrsf9', 'Il2rb', 'Ifng', 'Il10', 'Gzma', 'Gzmb', 'Prf1', 'Prdm1', 'Runx3', 'Tbx21', 'Cxcr1', 'Ccl5', 'Ccl4', 'Ccl3', 'Csf1']
finished: added
'score_ExhCD8Tcell_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_cDC_CCR7_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccl22', 'Ccl17', 'NaN', 'Nudt17', 'Ccr7']
finished: added
'score_cDC_CCR7_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Langerhans_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Klrd1']
finished: added
'score_Langerhans_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_Macrophage_MSR1_scanpyUP'
WARNING: genes are not in var_names and ignored: ['C1qa', 'Gpr34', 'C3', 'Cxcl12', 'Siglec1', 'Cd209c', 'F13a1', 'Msr1', 'Fcgr1']
finished: added
'score_Macrophage_MSR1_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_Macrophage_CXCL9_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcl10', 'Cxcl11', 'Cxcl9', 'Fcgr1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Monocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Lypd2', 'Vcan', 'Cd300e', 'Mmp9']
finished: added
'score_Monocyte_scanpyUP', score of gene set (adata.obs).
199 total control genes are used. (0:00:00)
computing score 'score_ExhBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Nr4a3', 'Egr3', 'Nr4a1', 'Egr2']
finished: added
'score_ExhBcell_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_Macrophage_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Msr1', 'Gpr34', 'Cd209c', 'Marco', 'Cxcl10', 'Cxcl11', 'Csf1r', 'Pou2f2']
finished: added
'score_Macrophage_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Hepatocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tat']
finished: added
'score_Hepatocyte_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_Erythrocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ermap', 'Car1']
finished: added
'score_Erythrocyte_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_AlphaPancreatic_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gc', 'Irx2']
finished: added
'score_AlphaPancreatic_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_BetaPancreatic_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ins1', 'Adcyap1', 'Mafa']
finished: added
'score_BetaPancreatic_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_DeltaPancreatic_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Lepr']
finished: added
'score_DeltaPancreatic_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_PPcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ppy', 'Stmn2', 'Fgb', 'Meis1']
finished: added
'score_PPcell_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_PancreaticDuctal_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cldn10', 'Slpi']
finished: added
'score_PancreaticDuctal_scanpyUP', score of gene set (adata.obs).
349 total control genes are used. (0:00:00)
computing score 'score_PancreaticAcinar_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cpa1', 'Ctrb1', 'Ctrc', 'Klk1b27', 'Cel', 'Cela3b']
finished: added
'score_PancreaticAcinar_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_EpsilonPancreatic_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Frzb', 'Sptssb', 'Nnmt']
finished: added
'score_EpsilonPancreatic_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_PancStellate_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Rgs5', 'Notch3', 'Ndufa4l2', 'Ppp1r14a', 'Plac9b']
finished: added
'score_PancStellate_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_Cholangiocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tff1']
finished: added
'score_Cholangiocyte_scanpyUP', score of gene set (adata.obs).
450 total control genes are used. (0:00:00)
computing score 'score_TAmplifying_scanpyUP'
finished: added
'score_TAmplifying_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_EntericGlial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Slc18a2', 'Aldh1a3', 'Foxd3', 'S100b']
finished: added
'score_EntericGlial_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_Adipocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Lep', 'Fabp4', 'Tcf21', 'Adipoq', 'P2rx5', 'Ucp1', 'Cidea', 'Lhx8']
finished: added
'score_Adipocyte_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Chondrocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Col6a1', 'Cytl1', 'Lum', 'Scrg1']
finished: added
'score_Chondrocyte_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_HematoMultipotentPC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tal1']
finished: added
'score_HematoMultipotentPC_scanpyUP', score of gene set (adata.obs).
148 total control genes are used. (0:00:00)
computing score 'score_HematoStem_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Avp', 'Crhbp', 'Cd34']
finished: added
'score_HematoStem_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Basophil_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ms4a3', 'Hdc', 'Cpa3']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_CommonLymphoidPC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Dntt', 'Iglc1', 'Vpreb2']
finished: added
'score_CommonLymphoidPC_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ProBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd72', 'Irf4', 'Tcl1']
finished: added
'score_ProBcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ImmaturecDC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Axl', 'Gm15922']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Schwann_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ngfr', 'S100b']
finished: added
'score_Schwann_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_Glial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Slc18a2', 'Aldh1a3', 'Foxd3', 'S100b', 'Ngfr']
finished: added
'score_Glial_scanpyUP', score of gene set (adata.obs).
299 total control genes are used. (0:00:00)
computing score 'score_Paneth_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Nod2']
finished: added
'score_Paneth_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_InnateLymphoid_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cd7', 'Il2rb', 'Xcl1', 'Igfbp7', 'Ncr1', 'Klrd1', 'Prmt9', 'Gata3', 'Il1rl1', 'Il7r']
finished: added
'score_InnateLymphoid_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_HEVEndothelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Flt4', 'Ccl21a']
finished: added
'score_HEVEndothelial_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_VesselEndothelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Pecam1', 'Plvap', 'Cdh5']
finished: added
'score_VesselEndothelial_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_Pericyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sod3', 'Cspg4', 'Rgs5', 'Ndufa4l2', 'Cox4i2']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Myofibroblast_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Des', 'Actg2', 'Myh11']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_InflamFibroblast_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Mmp2', 'Il11', 'Rarres2', 'Nnmt']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_InflamMonocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccl3', 'Il1b', 'Camp']
finished: added
'score_InflamMonocyte_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_Neural_scanpyUP'
WARNING: genes are not in var_names and ignored: ['S100b', 'Gpm6b', 'Cryab']
finished: added
'score_Neural_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Enteroendocrine_scanpyUP'
finished: added
'score_Enteroendocrine_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_Goblet_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tff1', 'Klk1b27']
finished: added
'score_Goblet_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_Enterocyte_scanpyUP'
finished: added
'score_Enterocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_FollicularBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cxcr4', 'Bank1']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_GermCenterBcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Tcl1']
finished: added
'score_GermCenterBcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_Brush_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Azgp1']
finished: added
'score_Brush_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ImmatureEnterocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Aqp8']
finished: added
'score_ImmatureEnterocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ImmatureGoblet_scanpyUP'
finished: added
'score_ImmatureGoblet_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_EnterocytePC_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Car1']
finished: added
'score_EnterocytePC_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_EpithelialStem_scanpyUP'
finished: added
'score_EpithelialStem_scanpyUP', score of gene set (adata.obs).
249 total control genes are used. (0:00:00)
computing score 'score_IgAPlasma_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Igha', 'Igha', 'Jchain']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_IgGPlasma_scanpyUP'
WARNING: provided gene list has length 0, scores as 0
computing score 'score_IgMPlasma_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ighm', 'Tnfrsf17', 'Jchain']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_ILC1_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Il2rb', 'Xcl1', 'Igfbp7', 'Ncr1', 'Klrd1']
finished: added
'score_ILC1_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_ILC3_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Lst1', 'Prmt9']
finished: added
'score_ILC3_scanpyUP', score of gene set (adata.obs).
99 total control genes are used. (0:00:00)
computing score 'score_ActTcell_scanpyUP'
finished: added
'score_ActTcell_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_NaiTcell_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Sell', 'Lef1', 'Nell2', 'Camk4']
finished: added
'score_NaiTcell_scanpyUP', score of gene set (adata.obs).
149 total control genes are used. (0:00:00)
computing score 'score_McellGut_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ntrk2', 'Gm21983', 'Icam2', 'Tnfaip2']
finished: added
'score_McellGut_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Mast_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Cpa3', 'AW551984']
finished: added
'score_Mast_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ColorectalCancer_scanpyUP'
finished: added
'score_ColorectalCancer_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_T1Pneumocyte_scanpyUP'
finished: added
'score_T1Pneumocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_T2Pneumocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Napsa', 'Sftpd']
finished: added
'score_T2Pneumocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_Pneumocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Napsa', 'Sptb']
finished: added
'score_Pneumocyte_scanpyUP', score of gene set (adata.obs).
200 total control genes are used. (0:00:00)
computing score 'score_Club_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Scgb1a1', 'Bpifb1', 'Tmem45a', 'Scgb3a2']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_CiliatedEpithelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Foxj1', 'Ccdc78']
finished: added
'score_CiliatedEpithelial_scanpyUP', score of gene set (adata.obs).
199 total control genes are used. (0:00:00)
computing score 'score_Basal_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Krt5', 'Trp63']
WARNING: provided gene list has length 0, scores as 0
computing score 'score_Ionocyte_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Calca', 'Ascl1']
finished: added
'score_Ionocyte_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_ProlifMonocyte_scanpyUP'
finished: added
'score_ProlifMonocyte_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ILC2_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gata3', 'Il2ra', 'Il1rl1', 'Il7r']
finished: added
'score_ILC2_scanpyUP', score of gene set (adata.obs).
100 total control genes are used. (0:00:00)
computing score 'score_ProlifMyeloid_scanpyUP'
finished: added
'score_ProlifMyeloid_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ProlifcDC_scanpyUP'
finished: added
'score_ProlifcDC_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_Mesothelial_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Ccdc80', 'Upk3b', 'Pla2g2a', 'Prg4', 'Calb2']
finished: added
'score_Mesothelial_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_Platelet_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Gp1ba', 'Gp9', 'Itga2b', 'Itgb3', 'Ppbp']
finished: added
'score_Platelet_scanpyUP', score of gene set (adata.obs).
50 total control genes are used. (0:00:00)
computing score 'score_ProlifTAmplifying_scanpyUP'
finished: added
'score_ProlifTAmplifying_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ProlifEpithelialStem_scanpyUP'
finished: added
'score_ProlifEpithelialStem_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_ProlifEnterocytePC_scanpyUP'
finished: added
'score_ProlifEnterocytePC_scanpyUP', score of gene set (adata.obs).
150 total control genes are used. (0:00:00)
computing score 'score_CryptScoreParikh2019_scanpyUP'
WARNING: genes are not in var_names and ignored: ['Selenop', 'Dhrs9', 'Pkib']
finished: added
'score_CryptScoreParikh2019_scanpyUP', score of gene set (adata.obs).
348 total control genes are used. (0:00:00)